DNA Damage Atlas


GSM3834285-CIS12HL1




Basic Information

Manual

Sample ID:   

SRR9163863


Source Project ID:   

GSE132002

Cell Type:   

Liver


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Cisplatin


Treatment Dose:   

1mg/mL


Genotype:   

WT


Harvested Time:   

sacrifice time: 12h


Layout:   

SINGLE


Instrument model:   

illumina HiSeq 4000


Technique:   

XR-seq


Others:   

age: post natal day 6 months


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM067004125217.743/
rDNA0463037126.9443/
chrUn_JH58430410324810385210354911.7517/
rDNA2487726912261637.17671/
chr63080272930806643308050905.83191/
chr87689817476903161769020235.11982/
chr85765087957654222576528714.91862/
chrX1434827191434833661434830574.81448/
chr36136158761366377613639234.808/
chrUn_GL456389973413419106704.767/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA14452637127.6489/
chrUn_GL45638910352109811067013.0707/
rDNA2498026800261638.02451/
chr63080272930806608308050905.88453/
chr111160912771160923971160919655.79041/
chr142149843921501666214998885.7284/
chr107980151479803399798022985.63477/
chr116999517469997793699968705.6154/
chr87689838476902803769020235.60456/
chr88087909780881199808803365.56323/
Download the Full Merged Peak List



Motif Analysis

Manual





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