DNA Damage Atlas


GSM3834300-CIS4HL2




Basic Information

Manual

Sample ID:   

SRR9163878


Source Project ID:   

GSE132002

Cell Type:   

Liver


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Cisplatin


Treatment Dose:   

1mg/mL


Genotype:   

WT


Harvested Time:   

sacrifice time: 4h


Layout:   

SINGLE


Instrument model:   

illumina HiSeq 4000


Technique:   

XR-seq


Others:   

age: post natal day 6 months


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA9462037419.1946/
chrUn_JH58430458282616285986315.4863/
chr174992817499749449948567.90905/
chr111023150671023213221023183497.53684/
chr23017103830178914301766817.52992/
chr16311210663115418631140727.43566/
chr56576285065765595657638637.37865/
chr153679215136795352367945097.20677/
chr87689830776903434769019417.06783/
chr133782344937828508378261037.03368/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_JH58430458282616285986315.4863/
chr174992904499749449948568.00421/
chr133782395137828508378261037.67616/
chr111023150671023213221023183497.53684/
chr16311210663115418631140727.43566/
chr148741542787418251874171107.40359/
chr56576285065765595657638637.37865/
chr54323209143236277432335337.23989/
chr153679215136795352367945097.20677/
chr135520825055213593552113047.13014/
Download the Full Merged Peak List



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab