DNA Damage Atlas


GSM3847113-Chd1_KO_DSB-seq_rep1




Basic Information

Manual

Sample ID:   

SRR9189553


Source Project ID:   

GSE132137

Cell Type:   

mESC


Organism:   

Mus musculus


Genotype:   

Chd1Δ/Δ


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 4000


Technique:   

DSB-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr93002131300248030023042691.95/
chrUn_GL4563922194423425222261907.06/
chrUn_JH5843041033711039551035521633.43/
chr9300294230031423002991887.12/
chrUn_GL456389102471091610644752.124/
chrUn_JH584304977619848198180728.942/
chrUn_JH584304728237343773136416.909/
chrUn_JH584304106651107020106835373.915/
rDNA853492468821310.67/
chrX143482872143483250143483058295.994/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr93002131300248030023042691.95/
chrUn_GL4563922194423425222261907.06/
chrUn_JH5843041033721039551035521636.23/
chr9300294330031423002991891.577/
chrUn_GL456389102591091110644771.734/
chrUn_JH584304977619847998180730.973/
chrUn_JH584304728237340473136440.589/
chrUn_JH584304106652107020106835374.931/
rDNA855692468821316.139/
chrX143482872143483249143483058296.78/
Download the Full Merged Peak List



Motif Analysis

Manual





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