DNA Damage Atlas

GSM3847116-Chd1_WT_DSB-seq_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR9189556


Source Project ID:   

GSE132137

Cell Type:   

mESC


Organism:   

Mus musculus


Genotype:   

Chd1fl/Δ


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 4000


Technique:   

DSB-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_JH5843041033721038521035512729.08/
chrUn_GL4563922185023429222342457.02/
chrUn_GL4563891028010910106311084.95/
chrUn_JH5843049776298474981791083.74/
chrUn_JH584304728267340473137627.7/
chrUn_JH584304106654107019106835515.152/
chrX143482870143483248143483058405.019/
chrUn_JH584304689366916168982299.554/
chr15216564902165670521656526217.439/
chr2920935629209376692093738167.304/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_JH5843041033721038521035512729.08/
chrUn_GL4563922185023426222342461.7/
chrUn_JH5843049779698474981791138.09/
chrUn_GL4563891028010910106311084.95/
chrUn_JH584304728267340473137627.7/
chrUn_JH584304106654107018106835516.567/
chrX143482875143483248143483058410.449/
chrUn_JH584304689396916068982304.975/
chr15216564912165670521656526218.455/
chr2920935649209376592093738169.801/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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