DNA Damage Atlas

GSM3893756-USOS-UVSSA-KO-CPD-Xrseq_Rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR9310675


Source Project ID:   

GSE132840

Cell Type:   

U2OS


Organism:   

Homo sapiens


Treatment:   

UV (254 nm)


Treatment Time:   

3hrs


Treatment Dose:   

20J/m2


Genotype:   

UVSSA KO


Harvested Time:   

3hrs


Layout:   

SINGLE


Instrument model:   

illumina HiSeq 2500


Technique:   

XR-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr5138856815138857025138856919288.427/
chr19409676204096782340967720139.24/
chr352290545229256522915499.9498/
chr610145156610145176810145166679.9599/
chr912046791212046811412046801279.9599/
chr116831186516831206816831196579.566/
chr1664462312644625156446241279.566/
chr1787009098701112870100979.566/
chr814230459114230479414230469179.566/
chr1464409387644095916440948879.1759/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr12228954222896762289580120.537/
chr16571255085712561357125608115.371/
chr22185154981851560518515508113.214/
chr8101801228101801335101801260113.214/
chr10720272297202738472027237104.206/
chr8819387628193888381938880100.115/
chr1770618957706191287061897994.4555/
chr226100501261006862610052487.3075/
chr141319016413191604131913184.1244/
chr627760072277601782776017676.1882/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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