DNA Damage Atlas

GSM3893757-USOS-UVSSA-KO-CPD-Xrseq_Rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR9310676


Source Project ID:   

GSE132840

Cell Type:   

U2OS


Organism:   

Homo sapiens


Treatment:   

UV (254 nm)


Treatment Time:   

3hrs


Treatment Dose:   

20J/m2


Genotype:   

UVSSA KO


Harvested Time:   

3hrs


Layout:   

SINGLE


Instrument model:   

illumina HiSeq 2500


Technique:   

XR-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr5138856951138857025138856987236.681/
chr14701104077011047570110440135.56/
chr12572311572379572344122.004/
chr18562947356295435629507118.518/
chr16226511322651842265147116.849/
chr7348780853487815934878121112.112/
chr439471110394712073947115795.0319/
chr1471276500712765987127654894.0622/
chr1012368851412368858412368854892.1809/
chr247270493472705644727052790.8826/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr5138856951138857025138856987236.681/
chr14701104077011047570110440135.56/
chr14712765327127659871276548125.701/
chr8126352059126352128126352108106.876/
chr439471110394712073947115795.0319/
chr814230472714230479414230476068.7917/
chr881938762819388838193882168.5643/
chr1210895997510896004410895999766.7978/
chr810180122810180133510180128060.3053/
chr2218515498185156051851555051.6902/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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