DNA Damage Atlas

GSM3912531-wild_type_KCl_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR9622478


Source Project ID:   

GSE133584

Cell Type:   

Liver


Organism:   

Mus musculus


Treatment:   

KCl


Treatment Time:   

2hrs


Treatment Dose:   

0.3 M


Genotype:   

WT


Harvested Time:   

age: 13 weeks


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

HydEn-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr32630051126300889263007132520.69-
chr152233091022331114223309131344.42+
chr65231031952310527523103221057.12+
chr183257813132578334325781331044.34+
chr12102214477102214803102214477763.932+
chrX118905291189073411890731738.13-
chr8125336102125336307125336303691.997-
chr17190157781901598019015780671.062+
chr9300165030031613002078653.018+
chr8259246222592482525924822593.992-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr32630051126300714263007134678.69-
chr152233091122331114223309131376.13+
chr65231032052310525523103221057.3+
chr12102214477102214679102214477876.317+
chr18325781313257833432578133834.509+
chrX118905291189073411890731709.938-
chr8125336102125336305125336303649.608-
chr14375873683758757337587571588.419-
chr8259246222592482525924822511.007-
chr19567351815673546056735381499.845-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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