DNA Damage Atlas


GSM3912535-samhd-KCl_rep1




Basic Information

Manual

Sample ID:   

SRR9622482


Source Project ID:   

GSE133584

Cell Type:   

Liver


Organism:   

Mus musculus


Treatment:   

KCl


Treatment Time:   

2hrs


Treatment Dose:   

0.3 M


Genotype:   

samhd-1


Harvested Time:   

age: 13 weeks


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

HydEn-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr111113006221113008261113006252895.7+
chr32630050326300971263007131935.55-
chr166265414862654352626543501675.27-
chr152233091122331114223309131330.53+
chr95011236450112567501125661262.64-
chr65231032052310526523103221159.52+
chr183257813232578334325781331118.81+
chr16937136169371387493713870733.534-
chrX118905291189073511890731624.358-
chr9300165330031793002078598.418+
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr32630050926300714263007132444.77-
chr15223309112233111422330913997.153+
chr11111300624111300825111300625975.437+
chr6523103205231052552310322693.31+
chr9501123645011256750112566583.303-
chr18325781323257833432578133582.543+
chr16626541496265435262654350574.347-
chr14287038022870400228704002525.931-
chr19567351805673538156735381478.349-
chr9300165430031793002078465.692+
Download the Full Merged Peak List



Motif Analysis

Manual





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