DNA Damage Atlas

GSM3912535-samhd-KCl_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR9622482


Source Project ID:   

GSE133584

Cell Type:   

Liver


Organism:   

Mus musculus


Treatment:   

KCl


Treatment Time:   

2hrs


Treatment Dose:   

0.3 M


Genotype:   

samhd-1


Harvested Time:   

age: 13 weeks


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

HydEn-seq


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr111113006221113008261113006252895.7+
chr32630050326300971263007131935.55-
chr166265414862654352626543501675.27-
chr152233091122331114223309131330.53+
chr95011236450112567501125661262.64-
chr65231032052310526523103221159.52+
chr183257813232578334325781331118.81+
chr16937136169371387493713870733.534-
chrX118905291189073511890731624.358-
chr9300165330031793002078598.418+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr32630050926300714263007132444.77-
chr15223309112233111422330913997.153+
chr11111300624111300825111300625975.437+
chr6523103205231052552310322693.31+
chr9501123645011256750112566583.303-
chr18325781323257833432578133582.543+
chr16626541496265435262654350574.347-
chr14287038022870400228704002525.931-
chr19567351805673538156735381478.349-
chr9300165430031793002078465.692+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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