DNA Damage Atlas

GSM3912536-samhd-KOH_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR9622483


Source Project ID:   

GSE133584

Cell Type:   

Liver


Organism:   

Mus musculus


Treatment:   

KOH


Treatment Time:   

2hrs


Treatment Dose:   

0.3 M


Genotype:   

samhd-1


Harvested Time:   

age: 13 weeks


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

HydEn-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr18325781323257833432578133407.558+
chr9501123645011256650112566395.571-
chr19567351805673538156735381325.259-
chr3263005112630102526300713303.85-
chr12102214477102214679102214477245.734+
chr12970613099706198097061785229.147-
chr15223309122233111322330912204.793+
chr16937136709371387093713870199.763-
chr9300164330028103002078168.065+
chr11111300625111300959111300625137.743+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr12970613269706191497061785239.364-
chr3263005112630096926300713206.722-
chr9300170930024553002078193.956+
chr9501123655011256650112566192.72-
chr19567351815673538156735381176.917-
chr18325781333257833332578133163.481+
chr11111300625111300825111300625123.568+
chr15223309122233111322330912114.882+
chr14287038022870400228704002113.888-
chr9303121230314483031215110.648+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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