DNA Damage Atlas

GSM3912537-samhd-KCl_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR9622484


Source Project ID:   

GSE133584

Cell Type:   

Liver


Organism:   

Mus musculus


Treatment:   

KCl


Treatment Time:   

2hrs


Treatment Dose:   

0.3 M


Genotype:   

samhd-1


Harvested Time:   

age: 13 weeks


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

HydEn-seq


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr75677001567720356772021078.59-
chr3263001282630100526300713837.37-
chr9501122975011256850112566751.96-
chr18325780793257833432578133700.556+
chr6523103205231060552310322632.159+
chr16937136149371387593713870541.431-
chrX118905281189073511890731520.746-
chr14287037872870400228704002451.764-
chr19567351795673553056735381449.266-
chr15223309092233148122330913388.224+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr32630050926300714263007132444.77-
chr15223309112233111422330913997.153+
chr11111300624111300825111300625975.437+
chr6523103205231052552310322693.31+
chr9501123645011256750112566583.303-
chr18325781323257833432578133582.543+
chr16626541496265435262654350574.347-
chr14287038022870400228704002525.931-
chr19567351805673538156735381478.349-
chr9300165430031793002074465.692+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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