DNA Damage Atlas

GSM3912540-samhd-KOH_rep3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR9622487


Source Project ID:   

GSE133584

Cell Type:   

Liver


Organism:   

Mus musculus


Treatment:   

KOH


Treatment Time:   

2hrs


Treatment Dose:   

0.3 M


Genotype:   

samhd-1


Harvested Time:   

age: 13 weeks


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

HydEn-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9300170930024553002073216.545+
chr12970613089706223997061685151.825+
chrUn_JH584304101132101363101135138.835+
chrUn_JH584304758837611575885133.117+
chrUn_GL456392218302253122121128.778+
chr9303119630315013031216124.623+
chr18325781333257833332578133112.842+
chr11111300625111300836111300625112.589+
chr19567351815673538156735381106.903-
chrUn_JH58430428069296072879799.6278+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr12970613269706191497061685239.364+
chr3263005112630096926300713206.722-
chr9300170930024553002073193.956+
chr9501123655011256650112566192.72-
chr19567351815673538156735381176.917-
chr18325781333257833332578133163.481+
chr11111300625111300825111300625123.568+
chr15223309122233111322330912114.882+
chr14287038022870400228704002113.888-
chr9303121230314483031216110.648+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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