DNA Damage Atlas

GSM3912541-samhd-KCl_rep4

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR9622488


Source Project ID:   

GSE133584

Cell Type:   

Liver


Organism:   

Mus musculus


Treatment:   

KCl


Treatment Time:   

2hrs


Treatment Dose:   

0.3 M


Genotype:   

samhd-1


Harvested Time:   

age: 13 weeks


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

HydEn-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr11111300624111300825111300625997.324+
chr15223309102233111422330912949.793+
chr3263002492630071426300713699.278-
chr6523103175231052552310322544.734+
chr16626541496265435262654350505.309-
chr7_GL456219_random932079340893207430.284+
chr18325781323257833432578133418.197+
chr9300165430032093002078402.265+
chr14375873663758757337587571388.662-
chr8125336102125336306125336303335.221-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr32630050926300714263007132444.77-
chr15223309112233111422330912997.153+
chr11111300624111300825111300625975.437+
chr6523103205231052552310322693.31+
chr9501123645011256750112566583.303-
chr18325781323257833432578133582.543+
chr16626541496265435262654350574.347-
chr14287038022870400228704002525.931-
chr19567351805673538156735381478.349-
chr9300165430031793002078465.692+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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