DNA Damage Atlas

GSM3927546-WT_AsiSI_MEFS_RPA

Basic Information Genome Browser Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR9641518


Source Project ID:   

GSE133805

Cell Type:   

MEF


Organism:   

Mus musculus


Strain:   

C57BL/6


Genotype:   

WT


Targeted break:   

AsiSI


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

ChIP-seq (anti-RPA)


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr118543101985431022/401/
chr154096053240960535/401/
chr18261526682615269/401/
chr48488476684884769/401/
chr33888577038885773/334/
chr2156144262156144265/267/
chr10111122201111122204/200/
chr10127103980127103983/200/
chr107578734775787350/200/
chr108040683480406837/200/
Download the Full Peak List


Visualization

Manual





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