DNA Damage Atlas

GSM3927550-BRCA1-KO-_AsiSI_MEFS_Rad51_with_FHA-PALB2

Basic Information Genome Browser Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR9641522


Source Project ID:   

GSE133805

Cell Type:   

MEF


Organism:   

Mus musculus


Strain:   

C57BL/6


Genotype:   

BRCA1-/-


Targeted break:   

AsiSI


Layout:   

SINGLE


Instrument model:   

NextSeq 550


Technique:   

ChIP-seq (anti-RAD51)


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1143739618143739621/952/
chr186934643369346436/952/
chr12100200485100200488/714/
chr161634506216345065/714/
chr11116412794116412797/476/
chr11120784165120784168/476/
chr175356720153567204/476/
chr69141133791411340/476/
chr86484954964849552/476/
chr178616790986167912/317/
Download the Full Peak List


Visualization

Manual





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