DNA Damage Atlas

GSM3927556-53BP1-KO_AsiSI_MEFS_ENDseq

Basic Information Genome Browser Telomere Analysis Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR9641528


Source Project ID:   

GSE133806

Cell Type:   

MEF


Organism:   

Mus musculus


Strain:   

C57BL/6


Genotype:   

53BP1-/-


In-situ Treatment:   

Exo VII + Exo T


Targeted break:   

AsiSI


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.004884


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr5115632482115632485/111649/
chr1143739618143739621/107001/
chr2156144262156144265/96558/
chr1125435718125435721/95262/
chr74424679644246799/87372/
chr115335176253351765/84400/
chr3145989049145989052/80769/
chr1870048867004889/78625/
chr2153649705153649708/74845/
chr11120784165120784168/71124/
Download the Full Peak List


Visualization

Manual





Copyright © 2023 All Rights Reserved by Wu lab