DNA Damage Atlas

GSM3927557-53BP1_S25A_AsiSI_MEFS_ENDseq

Basic Information Genome Browser Telomere Analysis Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR9641529


Source Project ID:   

GSE133806

Cell Type:   

MEF


Organism:   

Mus musculus


Strain:   

C57BL/6


Genotype:   

53BP1S25A


In-situ Treatment:   

Exo VII + Exo T


Targeted break:   

AsiSI


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.007994


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr5115632482115632485/65278/
chr119820368398203686/59245/
chr115335176253351765/50680/
chr9121477512121477515/48789/
chr1870048867004889/46849/
chr183577209135772094/46228/
chr11120784165120784168/45006/
chr2156144262156144265/43464/
chr3145989049145989052/38779/
chr4155841142155841145/37595/
Download the Full Peak List


Visualization

Manual





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