DNA Damage Atlas

GSM3927558-BRCA1-KO_AsiSI_MEFS_ENDseq_rep1

Basic Information Genome Browser Telomere Analysis Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR9641530


Source Project ID:   

GSE133806

Cell Type:   

MEF


Organism:   

Mus musculus


Strain:   

C57BL/6


Genotype:   

BRCA1-/-


In-situ Treatment:   

Exo VII + Exo T


Targeted break:   

AsiSI


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.00438


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr5115632482115632485/83128/
chr48488434484884347/62548/
chr119820368398203686/62190/
chr155088950250889505/59590/
chr2156144262156144265/58983/
chr3145989049145989052/50779/
chr13087336330873366/50173/
chr183577209135772094/49511/
chr11120784165120784168/47646/
chr1143739618143739621/45349/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr5115632482115632485/56525.2/
chr2156144262156144265/44443.6/
chr155088950250889505/43995.1/
chr119820368398203686/43829.4/
chr48488434484884347/40325.4/
chr74424679644246799/37197.2/
chr1143739618143739621/36025.3/
chr119467735494677357/33437.3/
chr115335176253351765/32675.9/
chr11120784165120784168/31940.8/
Download the Full Merged Peak List


Visualization

Manual





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