DNA Damage Atlas

GSM3927559-BRCA1-KO_53BP1-KO_AsiSI_MEFS_ENDseq

Basic Information Genome Browser Telomere Analysis Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR9641531


Source Project ID:   

GSE133806

Cell Type:   

MEF


Organism:   

Mus musculus


Strain:   

C57BL/6


Genotype:   

BRCA1-/- 53BP1-/-


In-situ Treatment:   

Exo VII + Exo T


Targeted break:   

AsiSI


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.003107


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr119820368398203686/617423/
chr2156144262156144265/555668/
chr1125435718125435721/543773/
chr156198646461986467/540940/
chr158172964181729644/523127/
chr115335176253351765/506887/
chr175625673756256740/505399/
chr62218703922187042/496841/
chr1972062827206285/493936/
chr13115090192115090195/480901/
Download the Full Peak List


Visualization

Manual





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