DNA Damage Atlas

GSM3927560-BRCA1-KO_53BP1_S25A_AsiSI_MEFS_ENDseq

Basic Information Genome Browser Telomere Analysis Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR9641532


Source Project ID:   

GSE133806

Cell Type:   

MEF


Organism:   

Mus musculus


Strain:   

C57BL/6


Genotype:   

BRCA1-/- 53BP1S25A


In-situ Treatment:   

Exo VII + Exo T


Targeted break:   

AsiSI


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.00955


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9121477512121477515/323935/
chr5115632482115632485/226427/
chr1143739618143739621/215838/
chr1972062827206285/197577/
chr155088950250889505/197184/
chr162051698720516990/178245/
chr183577209135772094/176006/
chr11120784165120784168/172420/
chr1125435718125435721/172253/
chr195736170657361709/166083/
Download the Full Peak List


Visualization

Manual





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