DNA Damage Atlas

GSM3927562-WT_AsiSI_MEFS_ENDseq_rep2

Basic Information Genome Browser Telomere Analysis Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR9641534


Source Project ID:   

GSE133806

Cell Type:   

MEF


Organism:   

Mus musculus


Strain:   

C57BL/6


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Targeted break:   

AsiSI


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.001671


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1143739618143739621/22425/
chr1870048867004889/22209/
chr5115632482115632485/19017/
chr115335176253351765/18925/
chr2156144262156144265/18093/
chr48488434484884347/18059/
chr155088950250889505/17694/
chr74424679644246799/16144/
chr9121477512121477515/14810/
chr183577209135772094/14479/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr5115632482115632485/69331.3/
chr1870048867004889/66166.9/
chr115335176253351765/65761.2/
chr155088950250889505/62550.1/
chr2156144262156144265/60258.6/
chr3145989049145989052/56130.8/
chr183577209135772094/55406.7/
chr119820368398203686/52514.4/
chr8106210920106210923/51423.8/
chr87028347570283478/50994.5/
Download the Full Merged Peak List


Visualization

Manual





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