DNA Damage Atlas

GSM3939060-NbBsrDI_NotI_1_1000_rep1

Basic Information Genome Browser Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR9676473


Source Project ID:   

GSE134225

Organism:   

Saccharomyces cerevisiae


Strain:   

W303


Treatment:   

1:1000 dilution of Nb.BsrDI/NotI-treated with NotI-treated DNA


Targeted break:   

Nb.BsrDI + NotI


Layout:   

SINGLE


Instrument model:   

NextSeq 500


Technique:   

GLOE-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrV275767275768/842079-
chrXIV220008220013/370460+
chrXII860192860197/331679+
chrXII252004252009/326435+
chrXIII409647409652/321039+
chrIV781472781477/318356+
chrV275768275773/305490+
chrVIII297938297943/276526+
chrX663002663007/276496+
chrIV146554146559/270215+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrV275767275768/849504/
chrXIV220008220013/368784/
chrXII860192860197/331614/
chrXII252004252009/329419/
chrXIII409647409652/324220/
chrIV781472781477/321613/
chrV275768275773/306245/
chrVIII297938297943/284474/
chrX663002663007/281150/
chrIV146554146559/280709/
Download the Full Merged Peak List


Visualization

Manual





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