DNA Damage Atlas

GSM3939108-WT_RAF_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR9676444


Source Project ID:   

GSE134225

Organism:   

Saccharomyces cerevisiae


Strain:   

JKM179


Treatment:   

growth in raffinose


Genotype:   

WT


Layout:   

SINGLE


Instrument model:   

NextSeq 500


Technique:   

GLOE-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM13836174211647121103.7-
chrM18954193271896818909.2-
chrM18462187071864318648.9-
chrM17743183201819116561.3-
chrM79106802007991916210.6+
chrM20291216662124215668.5+
chrM73593744627439414342.6+
chrM26088267552661614071.6+
chrM60429622476054213648.5-
chrM28467294742922912854.9+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM13837174211647114971.7-
chrM18954193271896813953.3-
chrM18462187071864313823.3-
chrM17881183201819112045.4-
chrM79110801427991911595.3+
chrM20522216662124211204+
chrM2846729387292299992.02+
chrM7360874462743949891.74+
chrM2612526729266169775.34+
chrM6042962182605429645.38-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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