DNA Damage Atlas

GSM3939128-LIG3_siLIG1_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR9676442


Source Project ID:   

GSE134225

Cell Type:   

HCT116


Organism:   

Homo sapiens


Treatment:   

LIG3-/-:mL3 + siRNA LIG1


Layout:   

SINGLE


Instrument model:   

NextSeq 500


Technique:   

GLOE-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM1596216559161052420.79-
chrM0409572325-
chrM315233553256204.783-
chrM9809107281005254.1704-
chr1733309951333106673331033847.4568-
chr1733328840333292243332898628.8009-
chr1733312920333132483331314025.8784+
chr1733316411333167613331659025.0495-
chr1733331209333316133333141524.242+
chr1733321200333215433332143523.5218+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM1596316558161052224.59-
chrM0409571769.07-
chr1733309951333106583331033861.3564-
chrM9809103351005245.2713-
chr1733328840333292173332898631.8831-
chr1733316411333167583331659029.6151-
chr1733331209333316133333141527.4681+
chr1733312920333132403331314027.4637+
chr1733321201333215413332143525.5713+
chr1733326259333265523332642123.3105+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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