DNA Damage Atlas

GSM3970412-shCTRL_Bliss_10_Gy_Replicate_1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR9824979


Source Project ID:   

GSE134797

Cell Type:   

AB22


Organism:   

Mus musculus


Treatment:   

gamma rays


Treatment Dose:   

10Gy


Genotype:   

shCTRL


Layout:   

PAIRED


Instrument model:   

Illumina NextSeq 500


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.003252


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA8053861185333465.36-
chr93023990302465230245652080.07-
rDNA196322122163529.482-
chr9300667030069013006899443.909-
chr16534986253500665349862359.044+
rDNA271129652911346.04-
chr19584507058452705845070292.98+
chr5294418662944206629442066292.98-
rDNA249452647224945278.206+
chrM15847071765257.622+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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