DNA Damage Atlas

GSM3970413-shCTRL_Bliss_10_Gy_Replicate_2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR9824980


Source Project ID:   

GSE134797

Cell Type:   

AB22


Organism:   

Mus musculus


Treatment:   

gamma rays


Treatment Dose:   

10Gy


Genotype:   

shCTRL


Layout:   

PAIRED


Instrument model:   

Illumina NextSeq 500


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA8053860385331576.79-
chr93023990302465230245651213.7-
chr9300664930069353006882579.703-
chr19584507058454675845070481.869+
rDNA268129112911332.699-
rDNA16228228300.79-
rDNA276612805127669261.61+
chrM133765855209257.597+
chr16345109483451114834510948255.07+
chr10892621838926238689262383251.3-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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