DNA Damage Atlas

GSM3970414-shCTRL_Bliss_3_Gy_Replicate_1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR9824981


Source Project ID:   

GSE134797

Cell Type:   

AB22


Organism:   

Mus musculus


Treatment:   

gamma rays


Treatment Dose:   

3Gy


Genotype:   

shCTRL


Layout:   

PAIRED


Instrument model:   

Illumina NextSeq 500


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA7984861885334014.65-
chr93023986302463830245721686.16-
rDNA1963227921631021.02-
rDNA113941286911776826.353-
chr9300665330069073006874752.738-
rDNA266832842911620.764-
chrM6365855216469.047+
chr19584507058452705845070418.24+
chr8197847011978490119784901298.743-
rDNA248972592624897267.098+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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