DNA Damage Atlas

GSM3970415-shCTRL_Bliss_3_Gy_Replicate_2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR9824982


Source Project ID:   

GSE134797

Cell Type:   

AB22


Organism:   

Mus musculus


Treatment:   

gamma rays


Treatment Dose:   

3Gy


Genotype:   

shCTRL


Layout:   

PAIRED


Instrument model:   

Illumina NextSeq 500


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.004577


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr195845070584527058450703700.96+
chr38406340284063602840634023700.96+
chr55750954557509745575095453700.96+
chrX5282703352827234528272333682.55-
chr194394801943948221439480193664.32+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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