DNA Damage Atlas

GSM3970416-shCTRL_Bliss_5_Gy_Replicate_1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR9824983


Source Project ID:   

GSE134797

Cell Type:   

AB22


Organism:   

Mus musculus


Treatment:   

gamma rays


Treatment Dose:   

5Gy


Genotype:   

shCTRL


Layout:   

PAIRED


Instrument model:   

Illumina NextSeq 500


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA8053860385332396.26-
chr93024014302462830244282262.52+
chr9300665830069513006693972.564+
rDNA271129112911712.403-
rDNA196322792163676.332-
chrM108681359010996628.129+
chr9919421091944129194410529.012-
chr15587291355872933958729135523.826+
chr9112273627112273831112273827523.826-
chr19584507058455125845070483.531+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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