DNA Damage Atlas

GSM3970417-shCTRL_Bliss_5_Gy_Replicate_2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR9824984


Source Project ID:   

GSE134797

Cell Type:   

AB22


Organism:   

Mus musculus


Treatment:   

gamma rays


Treatment Dose:   

5Gy


Genotype:   

shCTRL


Layout:   

PAIRED


Instrument model:   

Illumina NextSeq 500


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.000986


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA8053860385332182.61-
chr93023990302463030242371820.52-
rDNA16228228832.712-
rDNA115761250212091762.57-
rDNA266829112911726.481-
chr19584507058452705845070706.14+
rDNA83910391039529.605-
chrX497940044979420749794204521.778-
chrX700048997000510370005099519.221-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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