DNA Damage Atlas

GSM3970418-shCTRL_Bliss_Untreated_Replicate_1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR9824985


Source Project ID:   

GSE134797

Cell Type:   

AB22


Organism:   

Mus musculus


Treatment:   

NT


Genotype:   

shCTRL


Layout:   

PAIRED


Instrument model:   

Illumina NextSeq 500


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA7978860385334948.17-
rDNA2668296229112945.34-
chr93023997302463230245871246.78-
rDNA1963243521631100.76-
rDNA1155812833117761009.04-
chr19584507058452705845070865.929+
chr16499380304993824449938030462.446+
chrM476265534963455.861-
chr19580107058013585801070429.528+
rDNA248842643625084414.473-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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