DNA Damage Atlas

GSM3970419-shCTRL_Bliss_Untreated_Replicate_2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR9824986


Source Project ID:   

GSE134797

Cell Type:   

AB22


Organism:   

Mus musculus


Treatment:   

NT


Genotype:   

shCTRL


Layout:   

PAIRED


Instrument model:   

Illumina NextSeq 500


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA8007853385332013.48-
chr93024013302462430245861314.97-
rDNA2668294128681070.19-
chr9300665730069103006857866.095-
rDNA83911381039732.85-
chr19584507058452705845070547.805+
chr4155894588155894788155894788547.805-
chr8197847011978490119784901547.805-
chr9781753777817557778175377547.805+
chr15271593442715954627159546542.381-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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