DNA Damage Atlas

GSM3970420-shHMGB1_Bliss_10_Gy_Replicate_1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR9824987


Source Project ID:   

GSE134797

Cell Type:   

AB22


Organism:   

Mus musculus


Treatment:   

gamma rays


Treatment Dose:   

10Gy


Genotype:   

shHMGB1


Layout:   

PAIRED


Instrument model:   

Illumina NextSeq 500


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA7994860385332266-
chr93023986302464230242181309.82-
chrM108611383711271538.075+
rDNA253532589725364430.769+
rDNA196322102163368.954-
chrM164154191919320.473-
chrUn_JH584304600146028360014290.382+
chr8106998910106999116106998910252.792+
chrX157568903157569122157568920237.786+
chr19584507058452705845070195.282+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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