DNA Damage Atlas

GSM3970421-shHMGB1_Bliss_10_Gy_Replicate_2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR9824988


Source Project ID:   

GSE134797

Cell Type:   

AB22


Organism:   

Mus musculus


Treatment:   

gamma rays


Treatment Dose:   

10Gy


Genotype:   

shHMGB1


Layout:   

PAIRED


Instrument model:   

Illumina NextSeq 500


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr93024008302463430245981752.91-
rDNA8053860385331348.82-
chr9300665730069083006902800.47-
chr19584507058452705845070463.657+
chrX166533951166534155166534151378.805-
chr9781753777817557778175377231.829+
rDNA83910391039231.829-
chr11221254682212567022125668229.533-
chr1587995125879971458799512229.533+
chr19386969203869712238696920229.533+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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