DNA Damage Atlas

GSM3970422-shHMGB1_Bliss_3_Gy_Replicate_1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR9824989


Source Project ID:   

GSE134797

Cell Type:   

AB22


Organism:   

Mus musculus


Treatment:   

gamma rays


Treatment Dose:   

3Gy


Genotype:   

shHMGB1


Layout:   

PAIRED


Instrument model:   

Illumina NextSeq 500


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr93023996302463230245782066.18-
rDNA1963227921631475.6-
rDNA799286038533936.603-
rDNA266829512868823.833-
chr9300667130069113006892706.499-
chrM109071345613053573.736-
rDNA115761287411776538.855-
chr8197847011978490119784901529.874-
rDNA83910391039529.874-
rDNA383603859538381450.957+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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