DNA Damage Atlas

GSM3970423-shHMGB1_Bliss_3_Gy_Replicate_2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR9824990


Source Project ID:   

GSE134797

Cell Type:   

AB22


Organism:   

Mus musculus


Treatment:   

gamma rays


Treatment Dose:   

3Gy


Genotype:   

shHMGB1


Layout:   

PAIRED


Instrument model:   

Illumina NextSeq 500


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr93023992302463430245651598.14-
chrM108671359711841460.062+
chr9300665930068983006859444.093-
rDNA248652575924934277.02+
chr8105598025105598227105598225262.719-
chr4102286228102286431102286228261.424+
chr6147815429147815633147815429260.143+
rDNA805385338533257.975-
chr1120036994120037200120036994257.617+
chr12115826528115826743115826728246.833-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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