DNA Damage Atlas

GSM3970424-shHMGB1_Bliss_5_Gy_Replicate_1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR9824991


Source Project ID:   

GSE134797

Cell Type:   

AB22


Organism:   

Mus musculus


Treatment:   

gamma rays


Treatment Dose:   

5Gy


Genotype:   

shHMGB1


Layout:   

PAIRED


Instrument model:   

Illumina NextSeq 500


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.003155


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA8019860385331751.83-
chr9302399030246423024591975.919-
chr9300666530068973006869484-
rDNA115581254511776480.35-
rDNA266829112868410.747-
chr17635164256351663163516625363.392-
chrM16065775213334.416+
chr4297242322972443529724232245.841+
chr19584507058452705845070187.147+
chr8748370907483729174837290186.216-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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