DNA Damage Atlas

GSM3970425-shHMGB1_Bliss_5_Gy_Replicate_2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR9824992


Source Project ID:   

GSE134797

Cell Type:   

AB22


Organism:   

Mus musculus


Treatment:   

gamma rays


Treatment Dose:   

5Gy


Genotype:   

shHMGB1


Layout:   

PAIRED


Instrument model:   

Illumina NextSeq 500


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr93023990302463130245721420.35-
rDNA8053853385331185.48-
chr9300666230069063006901466.418-
chr19584507058452705845070316.128+
rDNA249102644124910256.041+
chr6425658354256603842566035249.165-
chrM8265785199231.645+
chr1168423425168423625168423425189.677+
chr2137262175137262375137262175189.677+
chr2274140282741422827414028189.677+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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