DNA Damage Atlas

GSM3970427-shHMGB1_Bliss_Untreated_Replicate_2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR9824994


Source Project ID:   

GSE134797

Cell Type:   

AB22


Organism:   

Mus musculus


Treatment:   

NT


Genotype:   

shHMGB1


Layout:   

PAIRED


Instrument model:   

Illumina NextSeq 500


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.002874


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA8009860385331434.57-
chr93023990302462730245691421.34-
rDNA266829112868876.684-
rDNA204302066820431522.142+
chr9300665530069063006855495.099-
rDNA253012575325461471.314+
chrM108501352911426450.613+
rDNA210042163321204423.359-
rDNA196322792163393.259-
chrUn_JH584304600026023560002380.962+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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