DNA Damage Atlas

GSM3984757-saC9_R1_Rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR9856898


Source Project ID:   

GSE135064

Cell Type:   

293T


Organism:   

Homo sapiens


Treatment:   

nuclease delivery: PEI; saCas9:RAG1.1


Genotype:   

WT


Targeted break:   

RAG1


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr115254049525443252542583946.75-
chr15504656555046994550467923296.23-
chr115246759524710852469602514.92-
chr87288907672889510728892852471.78-
chr89931707699317493993172842104.81-
chr16978529805797852951.443+
chr1225139352225139554225139352724.18+
chr9280402372804043928040437724.18-
chr1274736092747381327473809717.08-
chr12232456023252752324560545.583+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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