DNA Damage Atlas

GSM3984764-saC9_R1_spC9D10A_AAVS1_Rep3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR9856905


Source Project ID:   

GSE135064

Cell Type:   

293T


Organism:   

Homo sapiens


Treatment:   

nuclease delivery: PEI; saCas9:RAG1.1; spCas9D10A:AAVS1


Genotype:   

WT


Targeted break:   

RAG1


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr195562616855628411556271222538.48+
chr87288907472889582728892852014.97-
chr15504657555047020550467922012.71-
chr115254044525441052542581922.76-
chr89931707899317485993172841571.88-
chr112708563327086943270863971562.76+
chr11524675752471045246904921.836+
chr6387107943871099538710794636.571+
chr6659499896595019165950189633.42-
chrX956933559569355795693555633.42-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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