Sample Detail

Basic Information

Manual

Sample ID:

SRR10018595,SRR10018596,SRR10018597,SRR10018598

Source Project ID:

GSE136288

Cell Type:

skin; foreskin

Organism:

Homo sapiens

Strain:

hTERT-immortalized fibroblasts

Treatment:

Nocodazole

Treatment Time:

16hrs

Treatment Dose:

100ng/mL

Layout:

PAIRED

Instrument model:

NextSeq 500

Technique:

BrdU-seq

Others:

full kinetic 1

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Peak Intensity

Top 10 Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr17	74543658	74544546	74544205	33.985	/
chr12	110250155	110252468	110251817	32.3913	/
chr12	110098742	110100750	110099412	29.6845	/
chr1	240725840	240726656	240726192	27.6917	/
chr19	14571317	14572428	14572049	25.2715	/
chr11	61264211	61265335	61264785	24.5785	/
chr19	48804806	48805967	48805510	24.3125	/
chr16	81610404	81612202	81610794	21.8784	/
chr7	1417934	1419970	1418520	21.8651	/
chr4	1498308	1499335	1498796	21.6369	/

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr12	110251137	110252468	110251817	47.4342	/
chr17	74543658	74544546	74544205	33.985	/
chr12	110098829	110100750	110099412	30.9898	/
chr1	240725927	240726656	240726192	30.8935	/
chr19	14571317	14572369	14572049	26.6888	/
chr19	48804825	48805967	48805510	24.717	/
chr7	1418108	1419970	1418520	23.7873	/
chr8	134233672	134234637	134233869	23.416	/
chr17	78242839	78243853	78243373	22.9508	/
chr16	81610404	81612202	81610794	21.8784	/

Download the Full Merged Peak List

Visualization

Manual

Profile

Heatmap

Download the matrix file

Motif Analysis

Manual

Download