Sample Detail

Basic Information

Manual

Sample ID:

SRR10018599,SRR10018600,SRR10018601,SRR10018602

Source Project ID:

GSE136288

Cell Type:

skin; foreskin

Organism:

Homo sapiens

Strain:

hTERT-immortalized fibroblasts

Treatment:

Nocodazole

Treatment Time:

19hrs

Treatment Dose:

100ng/mL

Layout:

PAIRED

Instrument model:

NextSeq 500

Technique:

BrdU-seq

Others:

full kinetic 1

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Peak Intensity

Top 10 Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr12	110251152	110252452	110251747	31.0649	/
chr12	110098674	110100843	110099411	29.0839	/
chr4	1498250	1499422	1498828	27.297	/
chr18	45746969	45748656	45747569	24.9068	/
chr7	1418068	1419922	1418493	21.6304	/
chr4	185384993	185385863	185385389	18.5157	/
chr17	74543576	74544704	74544140	16.9771	/
chr3	64194417	64195310	64194883	16.2728	/
chr16	4718235	4719144	4718913	15.8625	/
chr1	796987	797873	797418	15.6385	/

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr12	110251191	110252379	110251747	33.9936	/
chr12	110098861	110100724	110099411	33.74	/
chr4	1498397	1499372	1498828	32.6969	/
chr18	45746987	45748624	45747569	25.6676	/
chr7	1418068	1419922	1418493	21.6304	/
chr7	567749	568655	568441	19.3964	/
chr11	11581186	11582135	11581490	18.9923	/
chr4	185384993	185385850	185385389	18.7966	/
chr17	75505148	75506139	75505595	18.4716	/
chr19	48804865	48805929	48805511	18.1042	/

Download the Full Merged Peak List

Visualization

Manual

Profile

Heatmap

Download the matrix file

Motif Analysis

Manual

Download