Sample Detail

Basic Information

Manual

Sample ID:

SRR10018603,SRR10018604,SRR10018605,SRR10018606

Source Project ID:

GSE136288

Cell Type:

skin; foreskin

Organism:

Homo sapiens

Strain:

hTERT-immortalized fibroblasts

Treatment:

Nocodazole

Treatment Time:

22hrs

Treatment Dose:

100ng/mL

Layout:

PAIRED

Instrument model:

NextSeq 500

Technique:

BrdU-seq

Others:

full kinetic 1

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Peak Intensity

Top 10 Peaks

Chromosome	Start	End	Summit	Intensity	Strand
rDNA	31113	32604	31961	47.3776	/
chr18	45747100	45748617	45747575	31.6407	/
chr4	185385072	185385749	185385444	28.2037	/
chr21	39429475	39430493	39430123	27.0595	/
chr12	110098928	110100752	110100000	26.7704	/
chr4	1498299	1499429	1498811	25.7133	/
chr16	26824073	26825565	26824638	21.9025	/
chr12	110251208	110252223	110251749	20.8937	/
chr12	114671405	114672110	114671702	20.5536	/
chr11	2065859	2066869	2066422	19.8763	/

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
rDNA	31113	32604	31961	47.3776	/
chr18	45747100	45748617	45747575	31.6407	/
chr4	185385072	185385749	185385444	28.2037	/
chr12	110098928	110100669	110100000	28.0033	/
chr16	26824073	26825225	26824638	27.3186	/
chr21	39429475	39430493	39430123	27.0595	/
chr12	110251259	110252080	110251749	25.1873	/
chr11	11581124	11582055	11581407	23.2652	/
chr11	2066005	2066869	2066422	23.1477	/
chr17	78242990	78243725	78243301	21.9736	/

Download the Full Merged Peak List

Visualization

Manual

Profile

Heatmap

Download the matrix file

Motif Analysis

Manual

Download