DNA Damage Atlas


GSM4044023-BrdU-Seq_24h




Basic Information

Manual

Sample ID:   

SRR10018607,SRR10018608,SRR10018609,SRR10018610


Source Project ID:   

GSE136288

Cell Type:   

skin; foreskin


Organism:   

Homo sapiens


Strain:   

hTERT-immortalized fibroblasts


Treatment:   

Nocodazole


Treatment Time:   

24hrs


Treatment Dose:   

100ng/mL


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

BrdU-seq


Others:   

full kinetic 1


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA31617326043194158.1173/
chr518445651846219184532216.5502/
chr1788282718829040882872214.4892/
chr223113132314431231321614.4264/
chr2139429285394306073942987612.5904/
chr814304449814304544614304479612.3338/
chr418538495718538591218538539812.2434/
chr1872240153722408007224050812.1187/
chr990246915902484669024763911.7958/
rDNA13518145841376011.6137/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA31617326043194158.1173/
chr518448061846219184532218.8863/
chr2139429573394304243942987618.4273/
chr223114282314409231321614.9971/
chr130992016309925953099242014.8487/
chr1212425004012425087412425027113.9373/
chr715893877815893959115893919913.8743/
chr1933913162339140913391388413.6226/
chr824535324585624550213.537/
chr310915096109158261091561012.9079/
Download the Full Merged Peak List



Motif Analysis

Manual





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