Sample Detail

Basic Information

Manual

Sample ID:

SRR10018607,SRR10018608,SRR10018609,SRR10018610

Source Project ID:

GSE136288

Cell Type:

skin; foreskin

Organism:

Homo sapiens

Strain:

hTERT-immortalized fibroblasts

Treatment:

Nocodazole

Treatment Time:

24hrs

Treatment Dose:

100ng/mL

Layout:

PAIRED

Instrument model:

NextSeq 500

Technique:

BrdU-seq

Others:

full kinetic 1

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Peak Intensity

Top 10 Peaks

Chromosome	Start	End	Summit	Intensity	Strand
rDNA	31617	32604	31941	58.1173	/
chr5	1844565	1846219	1845322	16.5502	/
chr17	8828271	8829040	8828722	14.4892	/
chr2	2311313	2314431	2313216	14.4264	/
chr21	39429285	39430607	39429876	12.5904	/
chr8	143044498	143045446	143044796	12.3338	/
chr4	185384957	185385912	185385398	12.2434	/
chr18	72240153	72240800	72240508	12.1187	/
chr9	90246915	90248466	90247639	11.7958	/
rDNA	13518	14584	13760	11.6137	/

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
rDNA	31617	32604	31941	58.1173	/
chr5	1844806	1846219	1845322	18.8863	/
chr21	39429573	39430424	39429876	18.4273	/
chr2	2311428	2314409	2313216	14.9971	/
chr1	30992016	30992595	30992420	14.8487	/
chr12	124250040	124250874	124250271	13.9373	/
chr7	158938778	158939591	158939199	13.8743	/
chr19	33913162	33914091	33913884	13.6226	/
chr8	245353	245856	245502	13.537	/
chr3	10915096	10915826	10915610	12.9079	/

Download the Full Merged Peak List

Visualization

Manual

Profile

Heatmap

Download the matrix file

Motif Analysis

Manual

Download