Sample Detail

Basic Information

Manual

Sample ID:

SRR10018611,SRR10018612,SRR10018613,SRR10018614

Source Project ID:

GSE136288

Cell Type:

skin; foreskin

Organism:

Homo sapiens

Strain:

hTERT-immortalized fibroblasts

Treatment:

Nocodazole

Treatment Time:

28hrs

Treatment Dose:

100ng/mL

Layout:

PAIRED

Instrument model:

NextSeq 500

Technique:

BrdU-seq

Others:

full kinetic 1

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Peak Intensity

Top 10 Peaks

Chromosome	Start	End	Summit	Intensity	Strand
rDNA	31087	32604	31944	47.3556	/
chr2	2311139	2314402	2312907	24.9845	/
chr14	84991538	84992596	84992108	23.8032	/
chr5	1844492	1846516	1845419	23.29	/
chr16	26824063	26825665	26824383	18.5418	/
chr8	143044420	143045556	143045034	18.474	/
chr13	112614145	112615367	112614884	18.0326	/
chr4	172460995	172461486	172461281	16.1106	/
chr7	155651787	155653145	155652282	15.9295	/
chr7	157614453	157615900	157615250	15.7307	/

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr5	1844601	1846334	1845419	26.9213	/
chr2	2311170	2314402	2312907	25.2242	/
chr16	26824063	26825241	26824383	23.7082	/
chr8	143044594	143045493	143045034	23.0749	/
chr5	2439511	2440264	2439906	18.9734	/
chr7	153961437	153962373	153961871	18.6271	/
chr10	18855712	18859314	18858637	18.0841	/
chr7	68160042	68160899	68160425	16.8593	/
chr10	1540936	1542242	1541478	16.4401	/
chr7	155651795	155653145	155652282	16.0239	/

Download the Full Merged Peak List

Visualization

Manual

Profile

Heatmap

Download the matrix file

Motif Analysis

Manual

Download