Sample Detail

Basic Information

Manual

Sample ID:

SRR10018623,SRR10018624,SRR10018625,SRR10018626

Source Project ID:

GSE136288

Cell Type:

skin; foreskin

Organism:

Homo sapiens

Strain:

hTERT-immortalized fibroblasts

Treatment:

Nocodazole

Treatment Time:

19hrs

Treatment Dose:

100ng/mL

Layout:

PAIRED

Instrument model:

NextSeq 500

Technique:

BrdU-seq

Others:

full kinetic 2

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Peak Intensity

Top 10 Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr12	110098861	110100724	110100114	13.7869	/
chr9	90247016	90248349	90247264	13.6013	/
chr18	45746987	45748624	45748011	13.5367	/
chr11	110489891	110490894	110490275	11.1094	/
chr1	208322248	208323023	208322780	10.8848	/
chr8	37642515	37643539	37642826	10.7586	/
chr3	16218772	16219787	16219159	10.4819	/
chr7	189399	190282	189713	10.4091	/
chr16	4718271	4719261	4718937	10.3015	/
chr5	149966128	149967320	149966527	10.0345	/

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr12	110098861	110100724	110100114	13.7869	/
chr9	90247016	90248349	90247264	13.6013	/
chr18	45746987	45748624	45748011	13.5367	/
chr11	110489891	110490699	110490275	13.4789	/
chr5	149966234	149967158	149966527	12.7406	/
chr16	4718271	4719144	4718937	11.61	/
chr10	3850700	3851667	3850992	11.0022	/
chr7	189425	190282	189713	10.7248	/
chr12	124249849	124250927	124250318	10.6869	/
chr10	713286	714883	714094	10.6828	/

Download the Full Merged Peak List

Visualization

Manual

Profile

Heatmap

Download the matrix file

Motif Analysis

Manual

Download