Sample Detail

Basic Information

Manual

Sample ID:

SRR10018627,SRR10018628,SRR10018629,SRR10018630

Source Project ID:

GSE136288

Cell Type:

skin; foreskin

Organism:

Homo sapiens

Strain:

hTERT-immortalized fibroblasts

Treatment:

Nocodazole

Treatment Time:

22hrs

Treatment Dose:

100ng/mL

Layout:

PAIRED

Instrument model:

NextSeq 500

Technique:

BrdU-seq

Others:

full kinetic 2

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Peak Intensity

Top 10 Peaks

Chromosome	Start	End	Summit	Intensity	Strand
rDNA	28031	28809	28578	116.759	/
rDNA	31111	32608	31932	41.6707	/
rDNA	24326	24919	24693	21.012	/
chr9	90246953	90248392	90247623	14.9715	/
chr16	26824029	26825225	26824506	12.5018	/
chr12	110098918	110100669	110099425	12.3038	/
chr4	185385012	185386028	185385509	11.3936	/
chr21	36215397	36215978	36215650	11.3456	/
rDNA	41876	42598	42188	10.9114	/
chr18	45746981	45748776	45747559	10.4795	/

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
rDNA	31113	32604	31932	41.8384	/
chr4	185385072	185385749	185385509	16.8613	/
chr9	90246953	90248392	90247623	14.9715	/
chr21	36215397	36215844	36215650	14.3871	/
chr16	26824073	26825225	26824506	12.9095	/
chr12	110098928	110100669	110099425	12.3745	/
chr18	45747100	45748617	45747559	12.029	/
chr21	39429475	39430493	39430171	11.766	/
chr22	33426353	33427146	33426592	10.644	/
chr5	4973356	4974479	4974102	9.73531	/

Download the Full Merged Peak List

Visualization

Manual

Profile

Heatmap

Download the matrix file

Motif Analysis

Manual

Download