Sample Detail

Basic Information

Manual

Sample ID:

SRR10018631,SRR10018632,SRR10018633,SRR10018634

Source Project ID:

GSE136288

Cell Type:

skin; foreskin

Organism:

Homo sapiens

Strain:

hTERT-immortalized fibroblasts

Treatment:

Nocodazole

Treatment Time:

24hrs

Treatment Dose:

100ng/mL

Layout:

PAIRED

Instrument model:

NextSeq 500

Technique:

BrdU-seq

Others:

full kinetic 2

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Peak Intensity

Top 10 Peaks

Chromosome	Start	End	Summit	Intensity	Strand
rDNA	31107	32612	31962	45.6324	/
chrUn_gl000214	63843	65889	65110	24.7033	/
chrUn_gl000220	135959	137046	136192	15.4756	/
chr2	2311428	2314409	2312868	9.81063	/
chr16	26824042	26825620	26824703	9.58448	/
chr1	30811377	30811861	30811604	8.13101	/
chr18	74638029	74638725	74638507	7.8717	/
chr11	11581137	11581691	11581329	7.80006	/
chr21	39429573	39430424	39430163	7.61674	/
chr11	2062934	2064896	2063909	7.11868	/

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
rDNA	31617	32604	31962	52.0687	/
chr2	2311428	2314409	2312868	9.81063	/
chr7	158938778	158939591	158939184	8.06767	/
chr11	11581137	11581691	11581329	7.80006	/
chr21	39429573	39430424	39430163	7.61674	/
chr3	10915096	10915826	10915613	7.39937	/
chr11	2062934	2064896	2063909	7.11868	/
chr5	1844806	1846219	1845399	7.09939	/
chr7	155651991	155653046	155652378	6.50964	/
chr9	96471780	96472095	96471972	6.36916	/

Download the Full Merged Peak List

Visualization

Manual

Profile

Heatmap

Download the matrix file

Motif Analysis

Manual

Download