DNA Damage Atlas

GSM4044030-BrdU-Seq_2_28h

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10018635,SRR10018636,SRR10018637,SRR10018638


Source Project ID:   

GSE136288

Cell Type:   

skin; foreskin


Organism:   

Homo sapiens


Strain:   

hTERT-immortalized fibroblasts


Treatment:   

Nocodazole


Treatment Time:   

28hrs


Treatment Dose:   

100ng/mL


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

BrdU-seq


Others:   

full kinetic 2


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00021463805659776511424.1448/
chr223111702314515231341510.873/
chr1626823900268252412682462710.1284/
chrUn_gl0002392726127868274658.70177/
chr51844601184633418454178.5776/
chr52823970228241019282400928.13581/
chr75632689756327138563270167.51437/
chr71539614371539623731539619577.41669/
chr74969887849699611496990867.20597/
chrUn_gl0002166970670828700437.12872/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1626824063268252412682462711.4658/
chr223111702314402231341511.2298/
chrUn_gl0002392726127784274659.9551/
chr52823970228240925282400928.69943/
chr51844601184633418454178.5776/
chr116021445260215089602146267.58122/
chr71539614371539623731539619577.41669/
chrUn_gl0002204053841662410107.31743/
chr74969887849699611496990867.20597/
chr161329743013298063132977536.91389/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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