DNA Damage Atlas

GSM4044032-BrdU-Seq_Early_S_NELFA_siRNA

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10018643,SRR10018644,SRR10018645,SRR10018646


Source Project ID:   

GSE136288

Cell Type:   

skin; foreskin


Organism:   

Homo sapiens


Strain:   

hTERT-immortalized fibroblasts


Treatment:   

16h timepoint siGENOME Human NELFA siRNA Pool


Cell Phase:   

Early S


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

BrdU-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1211009880011010084511009941215.5987/
chr1845747054457487704574799212.827/
chr1914571146145725451457202610.8537/
chr414981611499472149881510.2979/
chr1211025002711025244011025159910.2511/
chr1778242743782439077824337110.0993/
chr2139429345394307203943011210.0413/
chr714178091420245141894610.0035/
chr36419431864195499641949879.82435/
chr17968947979307974219.51504/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1914571571145722861457202619.3101/
chr1211025119111025216411025159918.6891/
chr1211009893711010068611009941218.0986/
chr1778242980782437427824337114.7443/
chr1845747103457486824574799213.8818/
chr2139429625394306103943011213.5508/
chr364194497641953216419498713.5235/
chr414983831499370149881513.3993/
chr714180091419796141894612.9684/
chr1948804924488058544880522512.5417/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab